Transcript: lnc-PRDM9-23:1

Basic information

LNCipedia transcript ID: lnc-PRDM9-23:1 
LNCipedia gene ID: lnc-PRDM9-23
Location (hg38): chr5:21107431-21154676
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 548 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00009369; NONHSAT100708
Alternative gene names: XLOC_004312; linc-PRDM9-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.5845 non-coding 
CPAT coding probability 3.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRDM9-23:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRDM9-3:1
3.1 lnc-PRDM9-3:1
4.0 lnc-PRDM9-3:1
4.1 lnc-PRDM9-3:1
5.0 lnc-PRDM9-3:1
5.1 lnc-CARD6-176:1
5.2 lnc-PRDM9-23:1