Transcript: lnc-PREX1-9:1

Basic information

LNCipedia transcript ID: lnc-PREX1-9:1 
LNCipedia gene ID: lnc-PREX1-9
Location (hg38): chr20:48461872-48465180
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 770 bp
Exons: 2
Sources: Nielsen et al.,2014
Alternative transcript names: l_2130_chr20:47090117-47093426_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3748 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PREX1-9:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PREX1-9:1
4.0 lnc-PREX1-9:1
4.1 lnc-PREX1-9:1
5.0 lnc-PREX1-9:1
5.1 lnc-SULF2-23:1
5.2 lnc-PREX1-9:1