Transcript: lnc-PRIM2-1:1

Basic information

LNCipedia transcript ID: lnc-PRIM2-1:1 
LNCipedia gene ID: lnc-PRIM2-1
Location (hg38): chr6:60386698-60390527
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 345 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000421261.1; RP1-71H19.2-001; OTTHUMT00000443640.1; NONHSAT113294
Alternative gene names: ENSG00000266579.1; RP1-71H19.2; OTTHUMG00000178859.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.7449 non-coding 
CPAT coding probability 0.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRIM2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BAG2-1:1
4.0 lnc-BAG2-1:1
4.1 lnc-BAG2-1:1
5.0 lnc-BAG2-1:1
5.1 lnc-HCRTR2-23:1
5.2 lnc-PRIM2-1:1