Transcript: lnc-PRKAA2-2:1

Basic information

LNCipedia transcript ID: lnc-PRKAA2-2:1 
LNCipedia gene ID: lnc-PRKAA2-2
Location (hg38): chr1:56235096-56237863
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 417 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00000954; NONHSAT003437
Alternative gene names: XLOC_000213; linc-PRKAA2-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.8474 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKAA2-2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKAA2-2:1
3.1 lnc-PRKAA2-2:1
4.0 lnc-PRKAA2-2:1
4.1 lnc-PRKAA2-2:1
5.0 lnc-PRKAA2-2:1
5.1 lnc-MROH7-TTC4-18:1
5.2 lnc-PRKAA2-2:1