Transcript: lnc-PRKAB2-2:2

Basic information

LNCipedia transcript ID: lnc-PRKAB2-2:2 
LNCipedia gene ID: lnc-PRKAB2-2
Location (hg38): chr1:147002176-147003184
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 594 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00000637; ENST00000455718; ENST00000455718.1; RP4-704D21.2-002; OTTHUMT00000102089.1; NONHSAT005991
Alternative gene names: XLOC_001001; linc-NBPF11; ENSG00000234225; RP4-704D21.2; ENSG00000234225.1; OTTHUMG00000043709.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.454 non-coding 
CPAT coding probability 2.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKAB2-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKAB2-2:2
3.1 lnc-PRKAB2-2:2
4.0 lnc-PRKAB2-2:2
4.1 lnc-PRKAB2-2:2
5.0 lnc-PRKAB2-2:2
5.1 lnc-PPIAL4G-53:2
5.2 lnc-PRKAB2-2:2