Transcript: lnc-PRKACG-1:1

Basic information

LNCipedia transcript ID: lnc-PRKACG-1:1 
LNCipedia gene ID: lnc-PRKACG-1
RefSeq ID: NR_110647
Location (hg38): chr9:68953088-68975841
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2222 bp
Exons: 3
Sources: Biogazelle lncRNA chip; NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506785; NONHSAT131758; NR_110647; NR_110647.1
Alternative gene names: ENSG00000249652; LOC101927069


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -27.6631 non-coding 
CPAT coding probability 17.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKACG-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKACG-1:1
3.1 lnc-PRKACG-1:1
4.0 lnc-PRKACG-1:1
4.1 lnc-PRKACG-1:1
5.0 lnc-PRKACG-1:1
5.1 lnc-ZFAND5-29:1
5.2 lnc-PRKACG-1:1