Transcript: lnc-PRKCD-3:5

Basic information

LNCipedia transcript ID: lnc-PRKCD-3:5 
LNCipedia gene ID: lnc-PRKCD-3
Location (hg38): chr3:53347751-53348879
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1129 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000060210.1|ENCT00000289389.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -26.4955 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCD-3:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-CACNA1D-3:1
5.0 lnc-CACNA1D-3:1
5.1 lnc-IL17RB-3:2
5.2 lnc-PRKCD-3:5