Transcript: lnc-PRKCH-3:6

Basic information

LNCipedia transcript ID: lnc-PRKCH-3:6 
LNCipedia gene ID: lnc-PRKCH-3
Location (hg38): chr14:61650991-61653055
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1868 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_9130_transcript_4
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.9478 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCH-3:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-HIF1A-3:3
4.0 lnc-RP11-47I22.3.1-3:7
4.1 lnc-RP11-47I22.3.1-3:7
5.0 lnc-RP11-47I22.3.1-3:7
5.1 lnc-ACTR10-60:7
5.2 lnc-PRKCH-3:6