Transcript: lnc-PRKCQ-2:1

Basic information

LNCipedia transcript ID: lnc-PRKCQ-2:1 
LNCipedia gene ID: lnc-PRKCQ-2
Location (hg38): chr10:6774154-6779198
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 870 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00018425; NONHSAT011257
Alternative gene names: XLOC_008720; linc-PRKCQ-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.0829 non-coding 
CPAT coding probability 2.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCQ-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKCQ-2:1
3.1 lnc-PRKCQ-2:1
4.0 lnc-PRKCQ-2:1
4.1 lnc-PRKCQ-2:1
5.0 lnc-PRKCQ-2:1
5.1 lnc-KLF6-103:2
5.2 lnc-PRKCQ-2:1