Transcript: lnc-PRKCQ-2:4

Basic information

LNCipedia transcript ID: lnc-PRKCQ-2:4 
LNCipedia gene ID: lnc-PRKCQ-2
Ensembl Gene ID: ENSG00000281186
Ensembl Transcript ID: ENST00000628989
Location (hg38): chr10:6774307-6779180
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 699 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628989.1
Alternative gene names: ENSG00000281186.1; LINC00706


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -40.0829 non-coding 
CPAT coding probability 2.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCQ-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-PRKCQ-2:4
4.1 lnc-PRKCQ-2:4
5.0 lnc-PRKCQ-2:4
5.1 lnc-KLF6-103:4
5.2 lnc-PRKCQ-2:4