Transcript: lnc-PRKCQ-2:5

Basic information

LNCipedia transcript ID: lnc-PRKCQ-2:5 
LNCipedia gene ID: lnc-PRKCQ-2
Location (hg38): chr10:6774216-6779180
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 785 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000117224.1|MICT00000036732.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -179.1878 non-coding 
CPAT coding probability 1.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKCQ-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PRKCQ-2:5
5.0 lnc-PRKCQ-2:5
5.1 lnc-KLF6-103:5
5.2 lnc-PRKCQ-2:5