Transcript: lnc-PRKD1-1:5

Basic information

LNCipedia transcript ID: lnc-PRKD1-1:5 
LNCipedia gene ID: lnc-PRKD1-1
Ensembl Gene ID: ENSG00000248975
Ensembl Transcript ID: ENST00000548124
Location (hg38): chr14:29952397-29980254
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 233 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000548124; ENST00000548124.1; CTD-2251F13.1-003; OTTHUMT00000409380.1; NONHSAT036214
Alternative gene names: ENSG00000248975; CTD-2251F13.1; ENSG00000248975.2; OTTHUMG00000170491.1; AL133372.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -239.2807 non-coding 
CPAT coding probability 0.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKD1-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRKD1-1:5
3.1 lnc-PRKD1-1:5
4.0 lnc-PRKD1-1:5
4.1 lnc-PRKD1-1:5
5.0 lnc-PRKD1-1:5
5.1 lnc-EFS-90:10
5.2 lnc-PRKD1-1:5