Transcript: lnc-PRKN-1:2

Basic information

LNCipedia transcript ID: lnc-PRKN-1:2 
LNCipedia gene ID: lnc-PRKN-1
RefSeq ID: NR_024277
Location (hg38): chr6:161160114-161161982
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1869 bp
Exons: 1
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024277.1
Alternative gene names: AGPAT4-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 22.3682 non-coding 
CPAT coding probability 68.47% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRKN-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PRKN-1:2
5.1 lnc-PRKN-1:2
5.2 lnc-PRKN-1:2