Transcript: lnc-PRKN-1:3

Basic information

LNCipedia transcript ID: lnc-PRKN-1:3 
LNCipedia gene ID: lnc-PRKN-1
Location (hg38): chr6:161160132-161161982
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1851 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT115937; NR_024277
Alternative gene names: FLJ23112


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.3682 non-coding 
CPAT coding probability 80.88% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRKN-1:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PARK2-1:1
4.0 AGPAT4-IT1:1
4.1 AGPAT4-IT1:1
5.0 AGPAT4-IT1:1
5.1 lnc-PRKN-1:1
5.2 lnc-PRKN-1:3