Transcript: lnc-PRKN-21:10

Basic information

LNCipedia transcript ID: lnc-PRKN-21:10 
LNCipedia gene ID: lnc-PRKN-21
Location (hg38): chr6:163337587-163346582
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5581 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000090770.1|HBMT00001264994.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.8377 non-coding 
CPAT coding probability 11.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRKN-21:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-AL078585.1-21:6
5.0 lnc-AL078585.1-21:6
5.1 lnc-PRKN-21:4
5.2 lnc-PRKN-21:10