Transcript: lnc-PRL-3:4

Basic information

LNCipedia transcript ID: lnc-PRL-3:4 
LNCipedia gene ID: lnc-PRL-3
Ensembl Gene ID: ENSG00000228772
Ensembl Transcript ID: ENST00000427775
Location (hg38): chr6:22589137-22593833
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 743 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427775.2
Alternative gene names: ENSG00000228772.2; RP1-309H15.2; AL033539.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -156.1004 non-coding 
CPAT coding probability 1.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRL-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRL-3:4
4.0 lnc-PRL-3:4
4.1 lnc-PRL-3:4
5.0 lnc-PRL-3:4
5.1 lnc-C6orf62-54:6
5.2 lnc-PRL-3:4