Transcript: lnc-PRL-7:1

Basic information

LNCipedia transcript ID: lnc-PRL-7:1 
LNCipedia gene ID: lnc-PRL-7
Location (hg38): chr6:23016725-23176984
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 353 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000420572; ENST00000420572.1; RP1-209A6.1-001; OTTHUMT00000039995.1; NONHSAT108085
Alternative gene names: ENSG00000233358; RP1-209A6.1; ENSG00000233358.1; OTTHUMG00000014348.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.7009 non-coding 
CPAT coding probability 0.63% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRL-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRL-7:1
3.1 lnc-PRL-7:1
4.0 lnc-PRL-7:1
4.1 lnc-PRL-7:1
5.0 lnc-PRL-7:1
5.1 lnc-C6orf62-51:6
5.2 lnc-PRL-7:1