Transcript: lnc-PROC-1:22

Basic information

LNCipedia transcript ID: lnc-PROC-1:22 
LNCipedia gene ID: lnc-PROC-1
Location (hg38): chr2:127390506-127391401
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 896 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT074155; FPKM1_group_17156_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.9938 non-coding 
CPAT coding probability 5.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PROC-1:22 no no no no

Available literature

  1. Huang (2016), Aberrant expression of long noncoding RNAs in cumulus cells isolated from PCOS patients., J. Assist. Reprod. Genet.
  2. Zhu (2014), The long noncoding RNA expression profile of hepatocellular carcinoma identified by microarray analysis., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PROC-3:1
4.0 lnc-PROC-3:1
4.1 lnc-PROC-1:22
5.0 lnc-PROC-1:22
5.1 lnc-MYO7B-4:22
5.2 lnc-PROC-1:22