Transcript: lnc-PRODH2-5:5

Basic information

LNCipedia transcript ID: lnc-PRODH2-5:5 
LNCipedia gene ID: lnc-PRODH2-5
Location (hg38): chr19:35788876-35797885
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2167 bp
Exons: 8
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000433059; ENST00000433059.1; AC002398.5-001; OTTHUMT00000109494.1; NONHSAT065921
Alternative gene names: ENSG00000225872; AC002398.5; ENSG00000225872.2; OTTHUMG00000048120.2; LINC01529;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -70.8041 non-coding 
CPAT coding probability 9.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRODH2-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRODH2-1:1
3.1 lnc-PRODH2-1:1
4.0 LINC01529:2
4.1 LINC01529:2
5.0 LINC01529:2
5.1 lnc-SCGB2B2-57:5
5.2 lnc-PRODH2-5:5