Transcript: lnc-PRPF18-1:2

Basic information

LNCipedia transcript ID: lnc-PRPF18-1:2 
LNCipedia gene ID: lnc-PRPF18-1
Ensembl Gene ID: ENSG00000239665
Ensembl Transcript ID: ENST00000440878
Location (hg38): chr10:13631333-13648230
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 397 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000440878.1; RP11-295P9.3-002; OTTHUMT00000046875.1; NONHSAT011507; ENST00000440878.5
Alternative gene names: ENSG00000239665.1; RP11-295P9.3; OTTHUMG00000017701.1; ENSG00000239665.8; AL157392.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -50.666 non-coding 
CPAT coding probability 3.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRPF18-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRPF18-1:2
4.0 lnc-PRPF18-1:2
4.1 lnc-PRPF18-1:2
5.0 lnc-PRPF18-1:2
5.1 lnc-NPY4R2-365:5
5.2 lnc-PRPF18-1:2