Transcript: lnc-PRR14-1:2

Basic information

LNCipedia transcript ID: lnc-PRR14-1:2 
LNCipedia gene ID: lnc-PRR14-1
Ensembl Gene ID: ENSG00000260167
Ensembl Transcript ID: ENST00000563540
Location (hg38): chr16:30585907-30608593
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 482 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563540.1; RP11-146F11.5-001; OTTHUMT00000434412.1; NONHSAT141773
Alternative gene names: ENSG00000260167.1; RP11-146F11.5; OTTHUMG00000176951.1; AC093249.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.2551 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRR14-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR14-1:2
4.0 lnc-PRR14-1:2
4.1 lnc-PRR14-1:2
5.0 lnc-PRR14-1:2
5.1 lnc-ZNF646-52:13
5.2 lnc-PRR14-1:2