Transcript: lnc-PRR15L-2:2

Basic information

LNCipedia transcript ID: lnc-PRR15L-2:2 
LNCipedia gene ID: lnc-PRR15L-2
Ensembl Gene ID: ENSG00000264019
Ensembl Transcript ID: ENST00000580372
Location (hg38): chr17:47946802-47948272
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 396 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000580372.1; RP11-6N17.6-001; OTTHUMT00000441411.1; NONHSAT054351
Alternative gene names: ENSG00000264019.1; RP11-6N17.6; OTTHUMG00000178296.1; AC018521.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.778 non-coding 
CPAT coding probability 1.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRR15L-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRR15L-2:2
4.0 lnc-PRR15L-2:2
4.1 lnc-PRR15L-2:2
5.0 lnc-PRR15L-2:2
5.1 lnc-ZNF652-41:2
5.2 lnc-PRR15L-2:2