Transcript: lnc-PRSS23-1:2

Basic information

LNCipedia transcript ID: lnc-PRSS23-1:2 
LNCipedia gene ID: lnc-PRSS23-1
Location (hg38): chr11:86955712-87000959
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1178 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000499504; ENST00000499504.2; RP11-736K20.6-002; OTTHUMT00000393819.1; NONHSAT023507
Alternative gene names: ENSG00000246523; RP11-736K20.6; ENSG00000246523.2; OTTHUMG00000167232.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.5645 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS23-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRSS23-1:2
3.1 lnc-PRSS23-1:2
4.0 lnc-PRSS23-1:2
4.1 lnc-PRSS23-1:2
5.0 lnc-PRSS23-1:2
5.1 lnc-TRIM77-18:8
5.2 lnc-PRSS23-1:2