Transcript: lnc-PRSS23-3:1

Basic information

LNCipedia transcript ID: lnc-PRSS23-3:1 
LNCipedia gene ID: lnc-PRSS23-3
Ensembl Gene ID: ENSG00000254731
Ensembl Transcript ID: ENST00000526206
Location (hg38): chr11:86703099-86714092
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 432 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526206; ENST00000526206.1; CTD-2005H7.1-001; OTTHUMT00000393802.1; NONHSAT023491
Alternative gene names: ENSG00000254731; CTD-2005H7.1; ENSG00000254731.1; OTTHUMG00000167224.1; AP003059.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -136.1846 non-coding 
CPAT coding probability 6.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS23-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRSS23-3:1
3.1 lnc-PRSS23-3:1
4.0 lnc-PRSS23-3:1
4.1 lnc-PRSS23-3:1
5.0 lnc-PRSS23-3:1
5.1 lnc-TRIM77-23:1
5.2 lnc-PRSS23-3:1