Transcript: lnc-PRSS27-4:18

Basic information

LNCipedia transcript ID: lnc-PRSS27-4:18 
LNCipedia gene ID: lnc-PRSS27-4
Location (hg38): chr16:2638691-2673397
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 551 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000564598.1; RP11-20I23.12-002; OTTHUMT00000436113.1; NONHSAT147811
Alternative gene names: ENSG00000261169.1; RP11-20I23.12; OTTHUMG00000177288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.0448 non-coding 
CPAT coding probability 67.23% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRSS27-4:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS27-2:5
4.0 lnc-PRSS27-2:5
4.1 lnc-PRSS27-2:5
5.0 lnc-PRSS27-2:5
5.1 lnc-PKMYT1-32:18
5.2 lnc-PRSS27-4:18