Transcript: lnc-PRSS27-4:23

Basic information

LNCipedia transcript ID: lnc-PRSS27-4:23 
LNCipedia gene ID: lnc-PRSS27-4
Ensembl Gene ID: ENSG00000260565
Ensembl Transcript ID: ENST00000568970
Location (hg38): chr16:2667975-2671405
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 278 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568970.1; ERVK13-1-008; OTTHUMT00000436120.1; NONHSAT147823
Alternative gene names: ENSG00000260565.1; ERVK13-1; OTTHUMG00000176054.2; ENSG00000260565.2; ENSG00000260565.6; CTD-2270P14.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 26.365 non-coding 
CPAT coding probability 1.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS27-4:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS27-2:9
4.0 lnc-PRSS27-2:9
4.1 lnc-PRSS27-2:9
5.0 lnc-PRSS27-2:9
5.1 lnc-PKMYT1-32:23
5.2 lnc-PRSS27-4:23