Transcript: lnc-PRSS27-4:24

Basic information

LNCipedia transcript ID: lnc-PRSS27-4:24 
LNCipedia gene ID: lnc-PRSS27-4
Ensembl Gene ID: ENSG00000260565
Ensembl Transcript ID: ENST00000619862
Location (hg38): chr16:2660350-2665350
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5001 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563265.1; ERVK13-1-004; OTTHUMT00000436116.1; NONHSAT147819; ENST00000619862.1
Alternative gene names: ENSG00000260565.1; ERVK13-1; OTTHUMG00000176054.2; ENSG00000260565.6; CTD-2270P14.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 41.968 non-coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRSS27-4:24 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS27-2:10
4.0 lnc-PRSS27-2:10
4.1 lnc-PRSS27-2:10
5.0 lnc-PRSS27-2:10
5.1 lnc-PKMYT1-32:24
5.2 lnc-PRSS27-4:24