Transcript: lnc-PRSS27-4:6

Basic information

LNCipedia transcript ID: lnc-PRSS27-4:6 
LNCipedia gene ID: lnc-PRSS27-4
Ensembl Gene ID: ENSG00000260565
Ensembl Transcript ID: ENST00000568395
Location (hg38): chr16:2661149-2673441
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5578 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000568395.1; ERVK13-1-001; OTTHUMT00000431428.1
Alternative gene names: ENSG00000260565.1; ERVK13-1; OTTHUMG00000176054.2; ENSG00000260565.2; ENSG00000260565.6; CTD-2270P14.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 55.497 non-coding 
CPAT coding probability 99.99% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRSS27-4:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS27-2:2
4.0 lnc-PRSS27-2:2
4.1 lnc-PRSS27-2:2
5.0 lnc-PRSS27-2:2
5.1 lnc-PKMYT1-32:6
5.2 lnc-PRSS27-4:6