Transcript: lnc-PRSS27-4:8

Basic information

LNCipedia transcript ID: lnc-PRSS27-4:8 
LNCipedia gene ID: lnc-PRSS27-4
Location (hg38): chr16:2638666-2673422
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 718 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000562928.1; RP11-20I23.12-001; OTTHUMT00000436112.1; NONHSAT147810
Alternative gene names: ENSG00000261169.1; RP11-20I23.12; OTTHUMG00000177288.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.0448 non-coding 
CPAT coding probability 63.89% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-PRSS27-4:8 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRSS27-2:3
4.0 lnc-PRSS27-2:3
4.1 lnc-PRSS27-2:3
5.0 lnc-PRSS27-2:3
5.1 lnc-PKMYT1-32:8
5.2 lnc-PRSS27-4:8