Transcript: lnc-PRSS3-2:11

Basic information

LNCipedia transcript ID: lnc-PRSS3-2:11 
LNCipedia gene ID: lnc-PRSS3-2
Ensembl Gene ID: ENSG00000260947
Ensembl Transcript ID: ENST00000566968
Location (hg38): chr9:33697459-33700986
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3528 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566968.1; RP11-384P7.7-001; OTTHUMT00000430783.1
Alternative gene names: ENSG00000260947.1; RP11-384P7.7; OTTHUMG00000175677.1; AL356489.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.5532 non-coding 
CPAT coding probability 0.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS3-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRBV25OR9-2-1:1
4.0 lnc-TRBV25OR9-2-1:1
4.1 lnc-TRBV25OR9-2-2:10
5.0 lnc-TRBV25OR9-2-2:10
5.1 lnc-RECK-55:10
5.2 lnc-PRSS3-2:11