Transcript: lnc-PRSS3-2:16

Basic information

LNCipedia transcript ID: lnc-PRSS3-2:16 
LNCipedia gene ID: lnc-PRSS3-2
Ensembl Gene ID: ENSG00000227301
Ensembl Transcript ID: ENST00000449144
Location (hg38): chr9:33719690-33722555
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1144 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015660; ENST00000449144; ENST00000449144.1; RP11-384P7.5-001; OTTHUMT00000001049.1; NONHSAT130788
Alternative gene names: XLOC_007325; linc-PRSS3-2; ENSG00000227301; RP11-384P7.5; ENSG00000227301.1; OTTHUMG00000000412.1; AL356489.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.2011 non-coding 
CPAT coding probability 20.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS3-2:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRSS3-2:1
3.1 lnc-PRSS3-2:1
4.0 lnc-PRSS3-2:1
4.1 lnc-TRBV25OR9-2-2:15
5.0 lnc-TRBV25OR9-2-2:15
5.1 lnc-RECK-55:15
5.2 lnc-PRSS3-2:16