Transcript: lnc-PRSS55-1:2

Basic information

LNCipedia transcript ID: lnc-PRSS55-1:2 
LNCipedia gene ID: lnc-PRSS55-1
Ensembl Gene ID: ENSG00000253641
Ensembl Transcript ID: ENST00000517732
Location (hg38): chr8:10477199-10481466
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000517732; ENST00000517732.1; RP11-981G7.2-002; OTTHUMT00000375446.1; NONHSAT124993; ENST00000517732.5
Alternative gene names: ENSG00000253641; RP11-981G7.2; ENSG00000253641.1; OTTHUMG00000163782.1; ENSG00000253641.5; LINCR-0001; AC104964.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -105.9679 non-coding 
CPAT coding probability 8.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PRSS55-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PRSS55-1:2
3.1 lnc-PRSS55-1:2
4.0 lnc-PRSS55-1:2
4.1 lnc-PRSS55-1:2
5.0 lnc-PRSS55-1:2
5.1 lnc-DEFB106A-51:2
5.2 lnc-PRSS55-1:2