Transcript: lnc-PSD3-1:3

Basic information

LNCipedia transcript ID: lnc-PSD3-1:3 
LNCipedia gene ID: lnc-PSD3-1
Ensembl Gene ID: ENSG00000253557
Ensembl Transcript ID: ENST00000518417
Location (hg38): chr8:19183674-19235677
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 723 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518417; ENST00000518417.1; RP11-1080G15.1-003; OTTHUMT00000374891.1; NONHSAT125361; FPKM1_group_30956_transcript_1
Alternative gene names: ENSG00000253557; RP11-1080G15.1; ENSG00000253557.1; OTTHUMG00000163715.1; ENSG00000253557.5; AC100849.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -343.8323 non-coding 
CPAT coding probability 0.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSD3-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSD3-1:3
3.1 lnc-PSD3-1:3
4.0 lnc-PSD3-1:3
4.1 lnc-PSD3-1:3
5.0 lnc-PSD3-1:3
5.1 lnc-EGR3-36:9
5.2 lnc-PSD3-1:3