Transcript: lnc-PSMA2-1:4

Basic information

LNCipedia transcript ID: lnc-PSMA2-1:4 
LNCipedia gene ID: lnc-PSMA2-1
Ensembl Gene ID: ENSG00000232006
Ensembl Transcript ID: ENST00000588324
Location (hg38): chr7:42954135-42963343
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1238 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000588324.1
Alternative gene names: ENSG00000232006.4; AC005537.2; ENSG00000232006.8; AC005537.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.1679 non-coding 
CPAT coding probability 5.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMA2-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMA2-1:4
4.0 lnc-PSMA2-1:4
4.1 lnc-PSMA2-1:4
5.0 lnc-PSMA2-1:4
5.1 lnc-TNS3-80:16
5.2 lnc-PSMA2-1:4