Transcript: lnc-PSMB1-6:5

Basic information

LNCipedia transcript ID: lnc-PSMB1-6:5 
LNCipedia gene ID: lnc-PSMB1-6
Ensembl Gene ID: ENSG00000271234
Ensembl Transcript ID: ENST00000603529
Location (hg38): chr6:170297876-170298375
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 500 bp
Exons: 1
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT116268; ENST00000603529.1
Alternative gene names: ENSG00000271234.1; RP5-894D12.4; AL078605.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.1304 non-coding 
CPAT coding probability 0.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMB1-6:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DLL1-6:1
4.0 lnc-DLL1-6:1
4.1 lnc-DLL1-6:1
5.0 lnc-DLL1-6:1
5.1 lnc-PRKN-102:5
5.2 lnc-PSMB1-6:5