Transcript: lnc-PSMC3IP-3:9

Basic information

LNCipedia transcript ID: lnc-PSMC3IP-3:9 
LNCipedia gene ID: lnc-PSMC3IP-3
Location (hg38): chr17:42561308-42562027
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 720 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000266962.1|ENCT00000183894.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.6802 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMC3IP-3:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PSMC3IP-3:9
5.0 lnc-PSMC3IP-3:9
5.1 lnc-BRCA1-21:3
5.2 lnc-PSMC3IP-3:9