Transcript: lnc-PSMD7-1:1

Basic information

LNCipedia transcript ID: lnc-PSMD7-1:1 
LNCipedia gene ID: lnc-PSMD7-1
Ensembl Gene ID: ENSG00000260884
Ensembl Transcript ID: ENST00000564455
Location (hg38): chr16:74313337-74315634
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 513 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564455.1; AC009120.5-001; OTTHUMT00000434679.1; NONHSAT143675
Alternative gene names: ENSG00000260884.1; AC009120.5; OTTHUMG00000176994.1; AC009120.4; AC009120.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -52.8666 non-coding 
CPAT coding probability 0.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PSMD7-1:1
4.0 lnc-PSMD7-1:1
4.1 lnc-PSMD7-1:1
5.0 lnc-PSMD7-1:1
5.1 lnc-MARVELD3-51:1
5.2 lnc-PSMD7-1:1