Transcript: lnc-PSMD7-6:1

Basic information

LNCipedia transcript ID: lnc-PSMD7-6:1 
LNCipedia gene ID: lnc-PSMD7-6
Location (hg38): chr16:73511176-73511654
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 479 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000564291.1; RP11-44L9.3-001; OTTHUMT00000435203.1; NONHSAT143641
Alternative gene names: ENSG00000259971.1; RP11-44L9.3; OTTHUMG00000177074.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.3741 non-coding 
CPAT coding probability 0.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-44L9.1.1-3:1
4.0 lnc-RP11-44L9.1.1-3:1
4.1 lnc-RP11-44L9.1.1-3:1
5.0 lnc-RP11-44L9.1.1-3:1
5.1 lnc-MARVELD3-43:1
5.2 lnc-PSMD7-6:1