Transcript: lnc-PSMD7-7:2

Basic information

LNCipedia transcript ID: lnc-PSMD7-7:2 
LNCipedia gene ID: lnc-PSMD7-7
Location (hg38): chr16:73764166-73768602
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 651 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024463; NONHSAT143644
Alternative gene names: XLOC_011785; linc-PSMD7-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.7151 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-7:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-44L9.1.1-1:1
3.1 lnc-RP11-44L9.1.1-7:1
4.0 lnc-RP11-44L9.1.1-7:1
4.1 lnc-RP11-44L9.1.1-7:1
5.0 lnc-RP11-44L9.1.1-7:1
5.1 lnc-MARVELD3-45:2
5.2 lnc-PSMD7-7:2