Transcript: lnc-PSMD7-9:1

Basic information

LNCipedia transcript ID: lnc-PSMD7-9:1 
LNCipedia gene ID: lnc-PSMD7-9
Location (hg38): chr16:73812594-73816041
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 501 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024465; NONHSAT143649
Alternative gene names: XLOC_011787; linc-PSMD7-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.7069 non-coding 
CPAT coding probability 9.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMD7-9:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-44L9.1.1-3:1
3.1 lnc-RP11-44L9.1.1-9:1
4.0 lnc-RP11-44L9.1.1-9:1
4.1 lnc-RP11-44L9.1.1-9:1
5.0 lnc-RP11-44L9.1.1-9:1
5.1 lnc-MARVELD3-46:1
5.2 lnc-PSMD7-9:1