Transcript: lnc-PSMG1-4:14

Basic information

LNCipedia transcript ID: lnc-PSMG1-4:14 
LNCipedia gene ID: lnc-PSMG1-4
Ensembl Gene ID: ENSG00000237721
Ensembl Transcript ID: ENST00000419664
Location (hg38): chr21:39006648-39011329
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 509 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419664; ENST00000419664.1; AF064858.11-001; OTTHUMT00000194937.1; NONHSAT082137
Alternative gene names: ENSG00000237721; AF064858.11; ENSG00000237721.1; OTTHUMG00000086702.1; AF064858.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -102.0224 non-coding 
CPAT coding probability 6.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMG1-4:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMG1-5:1
3.1 lnc-PSMG1-6:1
4.0 lnc-PSMG1-5:3
4.1 lnc-PSMG1-4:14
5.0 lnc-PSMG1-4:14
5.1 lnc-CRYZL1-71:14
5.2 lnc-PSMG1-4:14

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