Transcript: lnc-PSMG1-4:15

Basic information

LNCipedia transcript ID: lnc-PSMG1-4:15 
LNCipedia gene ID: lnc-PSMG1-4
Ensembl Gene ID: ENSG00000235888
Ensembl Transcript ID: ENST00000417335
Location (hg38): chr21:38988707-39006153
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1412 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000417335; ENST00000417335.1; AF064858.8-001; OTTHUMT00000141409.2; NONHSAT082136
Alternative gene names: ENSG00000235888; AF064858.8; ENSG00000235888.1; OTTHUMG00000066035.2; AF064858.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.097 non-coding 
CPAT coding probability 0.52% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMG1-4:15 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMG1-6:1
3.1 lnc-PSMG1-7:1
4.0 lnc-PSMG1-7:1
4.1 lnc-PSMG1-4:15
5.0 lnc-PSMG1-4:15
5.1 lnc-CRYZL1-71:15
5.2 lnc-PSMG1-4:15