Transcript: lnc-PSMG1-4:3

Basic information

LNCipedia transcript ID: lnc-PSMG1-4:3 
LNCipedia gene ID: lnc-PSMG1-4
Ensembl Gene ID: ENSG00000237609
Ensembl Transcript ID: ENST00000440714
Location (hg38): chr21:39028536-39029128
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 292 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028936; ENST00000440714; ENST00000440714.1; AF064858.10-001; OTTHUMT00000141403.2; NONHSAT082144
Alternative gene names: XLOC_014081; linc-ERG-10; ENSG00000237609; AF064858.10; ENSG00000237609.1; OTTHUMG00000066033.2; AF064858.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -200.6428 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMG1-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PSMG1-3:3
3.1 lnc-PSMG1-4:3
4.0 lnc-PSMG1-4:3
4.1 lnc-PSMG1-4:3
5.0 lnc-PSMG1-4:3
5.1 lnc-CRYZL1-71:10
5.2 lnc-PSMG1-4:3