Transcript: lnc-PSMG3-2:2

Basic information

LNCipedia transcript ID: lnc-PSMG3-2:2 
LNCipedia gene ID: lnc-PSMG3-2
Ensembl Gene ID: ENSG00000234977
Ensembl Transcript ID: ENST00000450458
Location (hg38): chr7:1691906-1692450
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 454 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000450458; ENST00000450458.1; AC074389.7-001; OTTHUMT00000322868.1
Alternative gene names: ENSG00000234977; AC074389.7; ENSG00000234977.1; OTTHUMG00000151492.1; AC074389.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -176.0599 non-coding 
CPAT coding probability 6.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMG3-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC074389.6.1-1:1
3.1 lnc-AC074389.6.1-1:1
4.0 lnc-AC074389.6.1-1:1
4.1 lnc-AC074389.6.1-1:1
5.0 lnc-AC074389.6.1-1:1
5.1 lnc-GRIFIN-28:2
5.2 lnc-PSMG3-2:2