Transcript: lnc-PSMG3-3:1

Basic information

LNCipedia transcript ID: lnc-PSMG3-3:1 
LNCipedia gene ID: lnc-PSMG3-3
Location (hg38): chr7:1841616-1842176
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 337 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000428925.1; AC110781.5-001; OTTHUMT00000322899.1; NONHSAT118773
Alternative gene names: ENSG00000227990.1; AC110781.5; OTTHUMG00000151499.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.39 non-coding 
CPAT coding probability 12.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PSMG3-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC074389.6.1-3:1
4.0 lnc-AC074389.6.1-3:1
4.1 lnc-AC074389.6.1-3:1
5.0 lnc-AC074389.6.1-3:1
5.1 lnc-GRIFIN-18:1
5.2 lnc-PSMG3-3:1