Transcript: lnc-PTBP3-8:1

Basic information

LNCipedia transcript ID: lnc-PTBP3-8:1 
LNCipedia gene ID: lnc-PTBP3-8
Ensembl Gene ID: ENSG00000230185
Ensembl Transcript ID: ENST00000457681
Location (hg38): chr9:112484442-112487204
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 561 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000457681.1
Alternative gene names: ENSG00000230185.4; C9orf147


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -99.272 non-coding 
CPAT coding probability 4.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTBP3-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-C9orf147-1:6
4.1 lnc-C9orf147-1:6
5.0 lnc-C9orf147-1:6
5.1 lnc-SLC46A2-14:1
5.2 lnc-PTBP3-8:1