Transcript: lnc-PTBP3-8:5

Basic information

LNCipedia transcript ID: lnc-PTBP3-8:5 
LNCipedia gene ID: lnc-PTBP3-8
Ensembl Gene ID: ENSG00000230185
Ensembl Transcript ID: ENST00000460965
Location (hg38): chr9:112484529-112486505
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 446 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT134016; ENST00000460965.1
Alternative gene names: ENSG00000230185.4; C9orf147


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.6127 non-coding 
CPAT coding probability 4.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTBP3-8:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf147-1:5
4.0 lnc-C9orf147-1:5
4.1 lnc-C9orf147-1:5
5.0 lnc-C9orf147-1:5
5.1 lnc-SLC46A2-14:5
5.2 lnc-PTBP3-8:5