Transcript: lnc-PTBP3-8:6

Basic information

LNCipedia transcript ID: lnc-PTBP3-8:6 
LNCipedia gene ID: lnc-PTBP3-8
Ensembl Gene ID: ENSG00000230185
Ensembl Transcript ID: ENST00000412934
Location (hg38): chr9:112433816-112484626
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 584 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000412934.2; RP11-32M23.4-001; OTTHUMT00000053688.1; NONHSAT134013
Alternative gene names: ENSG00000251540.1; RP11-32M23.4; OTTHUMG00000020506.1; ENSG00000230185.4; C9orf147


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -99.272 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTBP3-8:6 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf147-1:1
4.0 lnc-C9orf147-1:1
4.1 lnc-C9orf147-1:1
5.0 lnc-C9orf147-1:1
5.1 lnc-SLC46A2-14:6
5.2 lnc-PTBP3-8:6