Transcript: lnc-PTER-2:2

Basic information

LNCipedia transcript ID: lnc-PTER-2:2 
LNCipedia gene ID: lnc-PTER-2
Ensembl Gene ID: ENSG00000226140
Ensembl Transcript ID: ENST00000434386
Location (hg38): chr10:16278701-16289048
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 435 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017792; ENST00000434386; ENST00000434386.1; RP11-461K13.1-002; OTTHUMT00000046999.1; NONHSAT011591; ENST00000434386.5
Alternative gene names: XLOC_008401; linc-PTER-1; ENSG00000226140; RP11-461K13.1; ENSG00000226140.1; OTTHUMG00000017736.1; ENSG00000226140.5; AL355339.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -67.9659 non-coding 
CPAT coding probability 4.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTER-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTER-2:1
3.1 lnc-PTER-2:2
4.0 lnc-PTER-2:2
4.1 lnc-PTER-2:2
5.0 lnc-PTER-2:2
5.1 lnc-NPY4R2-337:1
5.2 lnc-PTER-2:2