Transcript: lnc-PTGDS-1:4

Basic information

LNCipedia transcript ID: lnc-PTGDS-1:4 
LNCipedia gene ID: lnc-PTGDS-1
Location (hg38): chr9:136975078-136976103
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 588 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000238268.2|FTMT23500010495.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -30.5627 non-coding 
CPAT coding probability 3.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-PTGDS-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-PTGDS-1:4
5.0 lnc-PTGDS-1:4
5.1 lnc-GPSM1-34:2
5.2 lnc-PTGDS-1:4